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2019 Dresden Summer School in Systems Biology

Europe/Berlin
Center for Systems Biology Dresden

Center for Systems Biology Dresden

Pfotenhauerstr. 108
Description

Computational data analysis, modeling, and simulation are becoming as indispensable to the life sciences as mathematics is to physics. This course provides a glimpse into this fascinating, interdisciplinary world.

This school provides project-based research experience in a number of scientific fields at the intersection of biology and computer science. Whether you are interested in spatiotemporal modeling, bio-image analysis, virtual reality, machine learning, biomedical data science, or bioinformatics, you will gain insight into developing and applying new computational tools to answer biological questions. To keep up with the changing times, the course contents have been fully reconceived this year, involving the many directions in research pursued at the CSBD.

The Summer School is intended primarily for Master and Diploma students with a computational/quantitative background in Computer Science, Physics, Engineering, Mathematics, or related areas. For graduates of other disciplines, we assume Bachelor-level knowledge of mathematics and computer programming (independent proficiency in at least one programming language).

In addition to lectures and project work, we host a series of evening talks by distinguished scientists from various fields related to systems biology. These talks are intended to provide an overview of the breadth of the field also beyond the specific topic of the school. Learn more about the lecturers & presenters.

Lectures and group work will take place at the Center for Systems Biology Dresden and the Max Planck Institute for Molecular Cell Biology and Genetics. Accommodations for participants will be at Guesthouse Mezcalero in Dresden's vibrant Neustadt neighborhood.

Participants
  • Ali Seyfi
  • Anton Saevskiy
  • Bradley English
  • Daniel Etienne Mayer
  • Guillermo Nevot
  • Jana Vujadinovic
  • Mahdi Mollakazemiha
  • Mozhgan Khodadadi
  • Rachel Topno
  • Renata Sechi
  • Sagnik Saha
  • Sara Pereira
  • Vanessa Raskin
  • Yun Zhang
Brian von Rueden
    • 15:00 16:00
      Welcome: Opening Remarks Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 16:30 18:00
      Posters: Poster Session Atrium

      Atrium

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108

      Participants present posters of their previous work, getting to know the other presenters and participants in the process.

    • 18:00 19:00
      Tour MPI-CBG & CSBD

      Join a guided tour of the hosting institutes.

    • 19:00 20:30
      Welcome Dinner 1h 30m Canteen (MPI-CBG)

      Canteen

      MPI-CBG

    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

    • 10:00 11:45
      Intro to Group Projects & Formation Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:00
      Presentation: Intro to Group Projects in respective Labs Labs

      Labs

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 13:00 14:00
      Lunch 1h Dining Area (MPI-CBG)

      Dining Area

      MPI-CBG

    • 14:00 16:45
      Group Work
    • 16:45 17:00
      Coffee Break 15m
    • 17:00 19:00
      Group Work
    • 19:15 20:00
      Highlight Speaker Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 20:00 21:30
      Dinner + Meet the Speaker 1h 30m

      with Agnes Toth-Petroczy

    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

    • 10:00 11:45
      Presentation

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:45
      Presentation

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 13:45 15:00
      Lunch 1h 15m
    • 15:00 16:45
      Group Work
    • 16:45 17:00
      Coffee Break 15m
    • 17:00 18:45
      Group Work
    • 18:45 19:15
      Stability Analysis: Tutorial Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 19:15 20:00
      Highlight Speaker Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 20:00 21:30
      Dinner + Meet the Speaker 1h 30m

      with Nadine Vastenhouw

    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

      Gästehaus Mezcalero

    • 10:00 11:45
      Presentation Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:45
      Presentation

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 13:45 15:00
      Lunch 1h 15m
    • 15:00 16:45
      Group Work
    • 16:45 17:00
      Coffee Break 15m
    • 17:00 18:30
      Group Work
    • 18:30 19:15
      Group Progress Presentations

      5 minutes each

    • 19:15 20:00
      Highlight Speaker Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 20:00 21:30
      Dinner + Meet the Speaker 1h 30m
    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

    • 10:00 11:45
      Group Work
    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:00
      Group Work
    • 13:00 14:00
      Lunch 1h
    • 14:00 17:30
      Social Activity 3h 30m Schloss Pillnitz (Boat Ride)

      Schloss Pillnitz

      Boat Ride

    • 17:30 19:30
      Guided City Tour 2h Meet at Synagogue (Dresden Altstadt)

      Meet at Synagogue

      Dresden Altstadt

    • 20:00 22:00
      Dinner In Town 2h
    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

    • 10:00 11:45
      Presentation Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:45
      Presentation

      Ivo Sbalzarini, Florian Jug, Carl Modes, Agnes Toth-Petroczy, Christoph Zechner

    • 13:45 15:00
      Lunch 1h 15m
    • 15:00 16:45
      Group Work
    • 16:45 17:00
      Coffee Break 15m
    • 17:00 18:30
      Group Work
    • 18:30 19:15
      Group Progress Presentations Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 19:15 20:00
      Highlight Speaker Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 20:00 21:30
      Dinner + Meet the Speaker 1h 30m
    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

    • 10:00 11:45
      Group Work
    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:45
      Group Work
    • 13:45 15:00
      Lunch 1h 15m
    • 15:00 16:45
      Group Work
    • 16:45 17:00
      Coffee Break 15m
    • 17:00 18:30
      Group Work
    • 18:30 19:15
      Group Progress Presentations Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 19:15 20:00
      Highlight Speaker
    • 20:00 21:30
      Dinner + Meet the Speaker 1h 30m
    • 09:00 10:00
      Breakfast 1h Hotel

      Hotel

    • 10:00 11:45
      Group Work
    • 11:45 12:00
      Coffee Break 15m
    • 12:00 13:45
      Group Work
    • 13:45 15:00
      Lunch 1h 15m
    • 15:00 16:45
      Final Group Presentations I Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 16:45 17:00
      Coffee Break 15m
    • 17:00 18:00
      Final Group Presentations II Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 18:00 19:00
      Awards & Wrap-Up Top Floor Seminar Room

      Top Floor Seminar Room

      Center for Systems Biology Dresden

      Pfotenhauerstr. 108
    • 19:00 21:00
      Farewell Dinner & Party 2h
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