This Indico installation shall not be used to organise MPI-CBG courses and events from beginning of 2024 on. Please use MPG Indico instead.

Image analysis course

Europe/Berlin
SR4 (MPI-CBG)

SR4

MPI-CBG

Pfotenhauerstr. 108
Description

This course is aimed at beginners willing to get started with Image Analysis or to improve their basic knowledge.

The following concepts will be introduced with many ImageJ/Fiji hands-on-sessions and exercises along the way:

  • Basic concepts: image characteristics, visualisation, regions of interest and measurements
  • Segmentation 1: thresholding, mask/region analysis, spot detection and skeletonisation
  • Segmentation 2: image filters such as erosion/dilation, distance maps and the watershed algorithm
  • Visualize and explore 3D images
  • Spot detection and segmentation in 3D datasets
  • Measurements in time sequences
  • Tracking basics

The course will be held on November 30th, December 1st and 2nd from 9:00 to 14:00 each day, in Seminar room 4.

If you are interested, follow the link to the registration form in the left menu.

In accordance with the new MPI-CBG course recharge policy note that the course will cost 150 Euros for MPI-CBG staff (300 euros otherwise).  Please verify that this is O.K. with your group or service leader.

Example data
Registration
Image Analysis course registration Form
Surveys
Evaluation Template
    • 09:00 10:45
      Basic concepts

      Image visualisation and characteristics, Region of interests, Measures

    • 10:45 11:00
      Break 15m
    • 11:00 12:00
      Segmentation 1
    • 12:00 13:00
      Lunch break 1h
    • 13:00 14:30
      Segmentation 1
    • 09:00 10:45
      Segmentation 2
    • 10:45 11:00
      Break 15m
    • 11:00 12:00
      Visualize and explore 3D images
    • 12:00 13:00
      Lunch break 1h
    • 13:00 14:30
      Visualize and explore 3D images
    • 09:00 10:45
      Spot detection and segmentation in 3D datasets
    • 10:45 11:00
      Break 15m
    • 11:00 12:00
      Time sequences: Measurements
    • 12:00 13:00
      Lunch Break 1h
    • 13:00 14:30
      Time sequences: Tracking
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